Good Mac OS X 10.7+ chess program?

Chess.app can't do a lot of things I'd expect from a proper GUI:
-setup the board anyway you like
-have any time control. (the engine has a fixed max to adjust dificulty but not for the player or players)
-play online on telnet servers
-load games (though it saves them as .pgn which is useful)
-analyze games
-show the engine PV
-run variations
-play any engine other then sjeng (I've tried pluging in other xboard engines and renaming them)
-play any variant (even though its engine does)
And lets face it, a 3d mouse driven interface on a computer monitor is lousy to play on. Its easy to miss moves.
Other things xboard can do:
-engine vs engine matches
-run engine torunaments
-edit opening books
-support UCI and all its dialects for variant engines
So forth...
I have no idea what you mean by clone. Chess.app is ment to be a demo app for OSX, nothing a serious chess player would look for. And Xboard as a project has been around since the early '90s
Copyright notice in the XBoard source code says it is from 1991. Of course the present-day XBoard differs as much from that first version as a Space Shuttle differs from a Ford Model-T.
But what I get from your post is that Chess.app on that scale would look more like a bicycle...

Scid + StockFish or Critter + IcofyDatabase with 5 M games (you can filter for a new base +2300 years 1970-2014 or more new games year 2000-2014). In the past I pay for chess programs like Fritz versions and I use Windows. In the last 3 years i use Linux + this free combo and I very happy with them.