I found an example of an animal kingdom individual with 3 ears. But the only species I know of that has normally has more than 2 ears is corn (nyuk nyuk). Now 3 eyes is easy -- triops have 3 functioning eyes.

http://www.theguardian.com/artanddesign/2009/apr/14/performance-artist-ear-impant
Does any species exist that has more than two ears?